HL_5V93_037

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

5V93|1|A|U|1527, 5V93|1|A|U|1528

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_037 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.2684

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5V93|1|A|G|1520
5V93|1|A|U|1521
5V93|1|A|U|1522
5V93|1|A|G|1523
5V93|1|A|A|1524
5V93|1|A|U|1525
5V93|1|A|A|1526
5V93|1|A|U|1527
5V93|1|A|U|1528
5V93|1|A|C|1529

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23