HL_5V93_039

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCAGUGGUAACA

Length

12 nucleotides

Bulged bases

5V93|1|A|A|1690, 5V93|1|A|G|1691, 5V93|1|A|C|1698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_039 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.576

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5V93|1|A|U|1688
5V93|1|A|C|1689
5V93|1|A|A|1690
5V93|1|A|G|1691
5V93|1|A|U|1692
5V93|1|A|G|1693
5V93|1|A|G|1694
5V93|1|A|U|1695
5V93|1|A|A|1696
5V93|1|A|A|1697
5V93|1|A|C|1698
5V93|1|A|A|1699

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17