HL_5V93_062

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAGUGGAAG

Length

10 nucleotides

Bulged bases

5V93|1|A|A|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_062 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1293

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5V93|1|A|C|2642
5V93|1|A|G|2643
5V93|1|A|A|2644
5V93|1|A|G|2645
5V93|1|A|U|2646
5V93|1|A|G|2647
5V93|1|A|G|2648
5V93|1|A|A|2649
5V93|1|A|A|2650
5V93|1|A|G|2651

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15