HL_5V93_071

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCAGAACAC

Length

9 nucleotides

Bulged bases

5V93|1|A|C|3055

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_071 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.2182

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5V93|1|A|G|3054
5V93|1|A|C|3055
5V93|1|A|A|3056
5V93|1|A|G|3057
5V93|1|A|A|3058
5V93|1|A|A|3059
5V93|1|A|C|3060
5V93|1|A|A|3061
5V93|1|A|C|3062

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17