HL_5V93_078

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGCAUG

Length

6 nucleotides

Bulged bases

5V93|1|a|A|192, 5V93|1|a|U|193

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_078 not in the Motif Atlas

Geometric match to HL_4V9F_004

Geometric discrepancy: 0.3791

The information below is about HL_4V9F_004

Detailed Annotation

Mini UNCG related

Broad Annotation

Mini UNCG related

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

5V93|1|a|U|189
5V93|1|a|G|190
5V93|1|a|C|191
5V93|1|a|A|192
5V93|1|a|U|193
5V93|1|a|G|194

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17