HL_5V93_083

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5V93|1|a|A|343

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_083 not in the Motif Atlas

Homologous match to HL_6CZR_080

Geometric discrepancy: 0.2756

The information below is about HL_6CZR_080

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

58

Unit IDs

5V93|1|a|C|341
5V93|1|a|U|342
5V93|1|a|A|343
5V93|1|a|C|344
5V93|1|a|G|345
5V93|1|a|G|346

Current chains

Chain a

16S rRNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19