HL_5V93_099

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUCAAC

Length

7 nucleotides

Bulged bases

5V93|1|a|C|1160

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_099 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.4776

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5V93|1|a|G|1157
5V93|1|a|G|1158
5V93|1|a|U|1159
5V93|1|a|C|1160
5V93|1|a|A|1161
5V93|1|a|A|1162
5V93|1|a|C|1163

Current chains

Chain a

16S rRNA

Nearby chains