HL_5V93_120

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GACUGAGAUACGGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_120 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.4086

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5V93|1|a|G|319
5V93|1|a|A|320
5V93|1|a|C|321
5V93|1|a|U|322
5V93|1|a|G|323
5V93|1|a|A|324
5V93|1|a|G|325
5V93|1|a|A|326
5V93|1|a|U|327
5V93|1|a|A|328
5V93|1|a|C|329
5V93|1|a|G|330
5V93|1|a|G|331
5V93|1|a|C|332

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20