HL_5VPO_004

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CCUUGGG

Length

7 nucleotides

Bulged bases

5VPO|1|QA|U|189, 5VPO|1|QA|G|190, 5VPO|1|QA|G|191

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_004 not in the Motif Atlas

Homologous match to HL_6CZR_075

Geometric discrepancy: 0.2949

The information below is about HL_6CZR_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.4

Basepair signature

cWW-F-F

Number of instances in this motif group

28

Unit IDs

5VPO|1|QA|C|186|||F
5VPO|1|QA|C|187
5VPO|1|QA|U|188
5VPO|1|QA|U|189
5VPO|1|QA|G|190
5VPO|1|QA|G|191
5VPO|1|QA|G|191|||A

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QQ

30S ribosomal protein S17

Chain QT

30S ribosomal protein S20