HL_5VPO_008

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.062

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5VPO|1|QA|C|320
5VPO|1|QA|A|321
5VPO|1|QA|C|322
5VPO|1|QA|U|323
5VPO|1|QA|G|324
5VPO|1|QA|A|325
5VPO|1|QA|G|326
5VPO|1|QA|A|327
5VPO|1|QA|C|328
5VPO|1|QA|A|329
5VPO|1|QA|C|330
5VPO|1|QA|G|331
5VPO|1|QA|G|332
5VPO|1|QA|G|333

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16

Chain QT

30S ribosomal protein S20