HL_5VPO_047

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5VPO|1|RA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_047 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.0813

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

5VPO|1|RA|G|410
5VPO|1|RA|G|411
5VPO|1|RA|A|412
5VPO|1|RA|C|413
5VPO|1|RA|C|414
5VPO|1|RA|A|415
5VPO|1|RA|C|416
5VPO|1|RA|C|417

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RP

50S ribosomal protein L15