HL_5VPO_052

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CGUUGAG

Length

7 nucleotides

Bulged bases

5VPO|1|RA|U|614, 5VPO|1|RA|G|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_052 not in the Motif Atlas

Homologous match to HL_7A0S_019

Geometric discrepancy: 0.3229

The information below is about HL_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5VPO|1|RA|C|611
5VPO|1|RA|G|612
5VPO|1|RA|U|613
5VPO|1|RA|U|614
5VPO|1|RA|G|615
5VPO|1|RA|A|616
5VPO|1|RA|G|617

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4