HL_5VPO_062

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5VPO|1|RA|U|1066, 5VPO|1|RA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_062 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4131

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5VPO|1|RA|C|1064
5VPO|1|RA|U|1065
5VPO|1|RA|U|1066
5VPO|1|RA|A|1067
5VPO|1|RA|G|1068
5VPO|1|RA|A|1069
5VPO|1|RA|A|1070
5VPO|1|RA|G|1071
5VPO|1|RA|C|1072
5VPO|1|RA|A|1073
5VPO|1|RA|G|1074

Current chains

Chain RA

23S rRNA

Nearby chains