HL_5VPO_064

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_064 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.3362

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5VPO|1|RA|G|1171
5VPO|1|RA|G|1173
5VPO|1|RA|A|1174
5VPO|1|RA|U|1175
5VPO|1|RA|G|1176
5VPO|1|RA|A|1177
5VPO|1|RA|C|1178

Current chains

Chain RA

23S rRNA

Nearby chains