HL_5VPO_087

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5VPO|1|RA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_087 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0813

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPO|1|RA|C|2248
5VPO|1|RA|U|2249
5VPO|1|RA|G|2250
5VPO|1|RA|G|2251
5VPO|1|RA|G|2252
5VPO|1|RA|G|2253
5VPO|1|RA|C|2254
5VPO|1|RA|G|2255
5VPO|1|RA|G|2256

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16