HL_5VPO_138

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

UUCGG(1MG)GA

Length

8 nucleotides

Bulged bases

5VPO|1|XV|G|38

QA status

Modified nucleotides: 1MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

5VPO|1|XV|U|32
5VPO|1|XV|U|33
5VPO|1|XV|C|34
5VPO|1|XV|G|35
5VPO|1|XV|G|36
5VPO|1|XV|1MG|37
5VPO|1|XV|G|38
5VPO|1|XV|A|39

Current chains

Chain XV

P-site ASL SufA6

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain XI

30S ribosomal protein S9

Chain XM

30S ribosomal protein S13

Chain XX

messenger RNA

Chain YA

Large subunit ribosomal RNA; LSU rRNA