HL_5VPO_206

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CGUCAAG

Length

7 nucleotides

Bulged bases

5VPO|1|YA|U|2797

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_206 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.396

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5VPO|1|YA|C|2794
5VPO|1|YA|G|2795
5VPO|1|YA|U|2797
5VPO|1|YA|C|2798
5VPO|1|YA|A|2799
5VPO|1|YA|A|2801
5VPO|1|YA|G|2802

Current chains

Chain YA

23S rRNA

Nearby chains