HL_5VPO_220

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CGGCAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPO_220 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2698

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

5VPO|1|XA|C|1264
5VPO|1|XA|G|1265
5VPO|1|XA|G|1266
5VPO|1|XA|C|1267
5VPO|1|XA|A|1268
5VPO|1|XA|A|1269
5VPO|1|XA|C|1270
5VPO|1|XA|G|1271

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XM

30S ribosomal protein S13

Chain XS

30S ribosomal protein S19

Chain XU

30S ribosomal protein Thx