HL_5VPP_008
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CACUGAGACACGGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VPP_008 not in the Motif Atlas
- Homologous match to HL_4LFB_008
- Geometric discrepancy: 0.1699
- The information below is about HL_4LFB_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81205.3
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5VPP|1|QA|C|320
5VPP|1|QA|A|321
5VPP|1|QA|C|322
5VPP|1|QA|U|323
5VPP|1|QA|G|324
5VPP|1|QA|A|325
5VPP|1|QA|G|326
5VPP|1|QA|A|327
5VPP|1|QA|C|328
5VPP|1|QA|A|329
5VPP|1|QA|C|330
5VPP|1|QA|G|331
5VPP|1|QA|G|332
5VPP|1|QA|G|333
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QT
- 30S ribosomal protein S20
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