HL_5VPP_013

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_013 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2715

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5VPP|1|QA|C|522
5VPP|1|QA|A|523
5VPP|1|QA|G|524
5VPP|1|QA|C|525
5VPP|1|QA|C|526
5VPP|1|QA|G|527

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12