3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5VPP_020 not in the Motif Atlas
Homologous match to HL_6CZR_091
Geometric discrepancy: 0.1414
The information below is about HL_6CZR_091
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.6
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

5VPP|1|QA|C|897
5VPP|1|QA|G|898
5VPP|1|QA|C|899
5VPP|1|QA|A|900
5VPP|1|QA|A|901
5VPP|1|QA|G|902

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QQ
30S ribosomal protein S17
Chain RA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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