3D structure

PDB id
5VPP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site tRNA SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
GGCAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5VPP_028 not in the Motif Atlas
Homologous match to HL_6CZR_099
Geometric discrepancy: 0.2543
The information below is about HL_6CZR_099
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5VPP|1|QA|G|1265
5VPP|1|QA|G|1266
5VPP|1|QA|C|1267
5VPP|1|QA|A|1268
5VPP|1|QA|A|1269
5VPP|1|QA|C|1270

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QM
30S ribosomal protein S13
Chain QS
30S ribosomal protein S19

Coloring options:


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