HL_5VPP_034

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33239.4

Basepair signature

cWW-R-R-tWH-R-R-R

Number of instances in this motif group

106

Unit IDs

5VPP|1|QV|G|55
5VPP|1|QV|U|56
5VPP|1|QV|U|57
5VPP|1|QV|C|58
5VPP|1|QV|G|59
5VPP|1|QV|A|60
5VPP|1|QV|A|61
5VPP|1|QV|U|62
5VPP|1|QV|C|63

Current chains

Chain QV

P-site tRNA SufA6

Nearby chains

Chain RA

Large subunit ribosomal RNA; LSU rRNA