HL_5VPP_043
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUUGUC
- Length
- 7 nucleotides
- Bulged bases
- 5VPP|1|RA|U|270|||L, 5VPP|1|RA|U|270|||O
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VPP_043 not in the Motif Atlas
- Geometric match to HL_361D_002
- Geometric discrepancy: 0.3959
- The information below is about HL_361D_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5VPP|1|RA|G|270|||J
5VPP|1|RA|C|270|||K
5VPP|1|RA|U|270|||L
5VPP|1|RA|U|270|||M
5VPP|1|RA|G|270|||N
5VPP|1|RA|U|270|||O
5VPP|1|RA|C|270|||P
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R1
- 50S ribosomal protein L28
- Chain RI
- 50S ribosomal protein L9
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