HL_5VPP_043

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCUUGUC

Length

7 nucleotides

Bulged bases

5VPP|1|RA|U|270|||L, 5VPP|1|RA|U|270|||O

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_043 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3959

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5VPP|1|RA|G|270|||J
5VPP|1|RA|C|270|||K
5VPP|1|RA|U|270|||L
5VPP|1|RA|U|270|||M
5VPP|1|RA|G|270|||N
5VPP|1|RA|U|270|||O
5VPP|1|RA|C|270|||P

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9