HL_5VPP_046

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

5VPP|1|RA|G|329, 5VPP|1|RA|A|330, 5VPP|1|RA|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_046 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.1284

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

5VPP|1|RA|G|327
5VPP|1|RA|U|328
5VPP|1|RA|G|329
5VPP|1|RA|A|330
5VPP|1|RA|A|331
5VPP|1|RA|A|332
5VPP|1|RA|G|333
5VPP|1|RA|C|334
5VPP|1|RA|C|335

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RY

50S ribosomal protein L24