HL_5VPP_063

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5VPP|1|RA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_063 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.1895

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5VPP|1|RA|C|1064
5VPP|1|RA|U|1065
5VPP|1|RA|U|1066
5VPP|1|RA|A|1067
5VPP|1|RA|G|1068
5VPP|1|RA|A|1069
5VPP|1|RA|A|1070
5VPP|1|RA|G|1071
5VPP|1|RA|C|1072
5VPP|1|RA|A|1073
5VPP|1|RA|G|1074

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RQ

50S ribosomal protein L16