HL_5VPP_068

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

5VPP|1|RA|G|1325, 5VPP|1|RA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_068 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1434

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5VPP|1|RA|G|1324
5VPP|1|RA|G|1325
5VPP|1|RA|U|1326
5VPP|1|RA|C|1327
5VPP|1|RA|G|1328
5VPP|1|RA|U|1329
5VPP|1|RA|C|1330

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RR

50S ribosomal protein L17

Chain RW

50S ribosomal protein L22