HL_5VPP_070

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5VPP|1|RA|U|1396, 5VPP|1|RA|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_070 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1036

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5VPP|1|RA|G|1389
5VPP|1|RA|U|1390
5VPP|1|RA|U|1391
5VPP|1|RA|A|1392
5VPP|1|RA|A|1393
5VPP|1|RA|U|1394
5VPP|1|RA|A|1395
5VPP|1|RA|U|1396
5VPP|1|RA|U|1397
5VPP|1|RA|C|1398

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RX

50S ribosomal protein L23