HL_5VPP_085

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5VPP|1|RA|A|2030, 5VPP|1|RA|A|2031, 5VPP|1|RA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_085 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.0962

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

5VPP|1|RA|G|2027
5VPP|1|RA|U|2028
5VPP|1|RA|G|2029
5VPP|1|RA|A|2030
5VPP|1|RA|A|2031
5VPP|1|RA|G|2032
5VPP|1|RA|A|2033
5VPP|1|RA|U|2034
5VPP|1|RA|G|2035
5VPP|1|RA|C|2036

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RV

50S ribosomal protein L21