HL_5VPP_094

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

5VPP|1|RA|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_094 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1014

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5VPP|1|RA|C|2404
5VPP|1|RA|G|2405
5VPP|1|RA|U|2406
5VPP|1|RA|G|2407
5VPP|1|RA|U|2408
5VPP|1|RA|G|2409
5VPP|1|RA|G|2410
5VPP|1|RA|A|2411
5VPP|1|RA|A|2412
5VPP|1|RA|G|2413

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RP

50S ribosomal protein L15