HL_5VPP_099

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_099 not in the Motif Atlas

Geometric match to HL_3PDR_001

Geometric discrepancy: 0.1865

The information below is about HL_3PDR_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5VPP|1|RA|C|2658
5VPP|1|RA|G|2659
5VPP|1|RA|A|2660
5VPP|1|RA|G|2661
5VPP|1|RA|A|2662
5VPP|1|RA|G|2663

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6