HL_5VPP_103

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

5VPP|1|RA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_103 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.106

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5VPP|1|RA|G|2819
5VPP|1|RA|A|2820
5VPP|1|RA|A|2821
5VPP|1|RA|G|2822
5VPP|1|RA|A|2823
5VPP|1|RA|C|2824
5VPP|1|RA|C|2825
5VPP|1|RA|A|2826
5VPP|1|RA|C|2827

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RR

50S ribosomal protein L17