HL_5VPP_128

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGUGAAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_128 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3361

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5VPP|1|XA|G|1010
5VPP|1|XA|G|1011
5VPP|1|XA|U|1012
5VPP|1|XA|G|1013
5VPP|1|XA|A|1014
5VPP|1|XA|A|1015
5VPP|1|XA|A|1016
5VPP|1|XA|G|1017
5VPP|1|XA|C|1018
5VPP|1|XA|C|1019

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

30S ribosomal protein S14 type Z

Chain XS

30S ribosomal protein S19