HL_5VPP_148

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_148 not in the Motif Atlas

Homologous match to HL_7RQB_008

Geometric discrepancy: 0.1239

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

5VPP|1|YA|C|246
5VPP|1|YA|G|247
5VPP|1|YA|G|248
5VPP|1|YA|C|249
5VPP|1|YA|G|250
5VPP|1|YA|A|251
5VPP|1|YA|G|252

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain Y1

50S ribosomal protein L28

Chain Y8

50S ribosomal protein L35

Chain YP

50S ribosomal protein L15