HL_5VPP_164
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAAAAG
- Length
- 7 nucleotides
- Bulged bases
- 5VPP|1|YA|A|781, 5VPP|1|YA|A|784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VPP_164 not in the Motif Atlas
- Geometric match to HL_1P6V_001
- Geometric discrepancy: 0.3145
- The information below is about HL_1P6V_001
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_53890.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5VPP|1|YA|U|779
5VPP|1|YA|G|780
5VPP|1|YA|A|781
5VPP|1|YA|A|782
5VPP|1|YA|A|783
5VPP|1|YA|A|784
5VPP|1|YA|G|785
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YD
- 50S ribosomal protein L2
Coloring options: