HL_5VPP_171

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAUGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_171 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.3623

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.4

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

5VPP|1|YA|G|1171
5VPP|1|YA|G|1173
5VPP|1|YA|A|1174
5VPP|1|YA|U|1175
5VPP|1|YA|G|1176
5VPP|1|YA|A|1177
5VPP|1|YA|C|1178

Current chains

Chain YA

23S rRNA

Nearby chains