HL_5VPP_177
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUGGACG
- Length
- 8 nucleotides
- Bulged bases
- 5VPP|1|YA|A|1453, 5VPP|1|YA|U|1454
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5VPP_177 not in the Motif Atlas
- Geometric match to HL_7RQB_037
- Geometric discrepancy: 0.1116
- The information below is about HL_7RQB_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_32426.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5VPP|1|YA|C|1451
5VPP|1|YA|A|1453
5VPP|1|YA|U|1454
5VPP|1|YA|G|1455
5VPP|1|YA|G|1456
5VPP|1|YA|A|1457
5VPP|1|YA|C|1458
5VPP|1|YA|G|1459
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YR
- 50S ribosomal protein L17
Coloring options: