HL_5VPP_197

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_197 not in the Motif Atlas

Homologous match to HL_7RQB_056

Geometric discrepancy: 0.1102

The information below is about HL_7RQB_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12078.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

5VPP|1|YA|C|2324
5VPP|1|YA|G|2325
5VPP|1|YA|C|2326
5VPP|1|YA|A|2327
5VPP|1|YA|A|2328
5VPP|1|YA|G|2329
5VPP|1|YA|G|2330
5VPP|1|YA|G|2331

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain YG

50S ribosomal protein L5

Chain YQ

50S ribosomal protein L16