HL_5VPP_227

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

5VPP|1|QA|C|1028|||D

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5VPP_227 not in the Motif Atlas

Homologous match to HL_6CZR_235

Geometric discrepancy: 0.5395

The information below is about HL_6CZR_235

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPP|1|QA|C|1028|||B
5VPP|1|QA|G|1028|||C
5VPP|1|QA|C|1028|||D
5VPP|1|QA|G|1028|||E
5VPP|1|QA|A|1028|||F
5VPP|1|QA|G|1028|||G

Current chains

Chain QA

16S rRNA

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA