HL_5VW1_003
3D structure
- PDB id
- 5VW1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UGAAAA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- GNRA with GA tSW pair
- Broad Annotation
- GNRA with GA tSW pair
- Motif group
- HL_29031.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 35
Unit IDs
5VW1|1|C|U|72
5VW1|1|C|G|73
5VW1|1|C|A|74
5VW1|1|C|A|75
5VW1|1|C|A|76
5VW1|1|C|A|77
Current chains
- Chain C
- sgRNA
Nearby chains
- Chain A
- CRISPR-associated endonuclease Cas9/Csn1
Coloring options: