HL_5W4K_028

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5W4K|1|1A|A|1113, 5W4K|1|1A|G|1114, 5W4K|1|1A|A|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5W4K_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4041

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5W4K|1|1A|C|1110
5W4K|1|1A|U|1111
5W4K|1|1A|U|1112
5W4K|1|1A|A|1113
5W4K|1|1A|G|1114
5W4K|1|1A|A|1115
5W4K|1|1A|A|1116
5W4K|1|1A|G|1117
5W4K|1|1A|C|1118
5W4K|1|1A|A|1119
5W4K|1|1A|G|1120

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains