HL_5W4K_036

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

5W4K|1|1A|U|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5W4K_036 not in the Motif Atlas

Geometric match to HL_7RQB_037

Geometric discrepancy: 0.0548

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5W4K|1|1A|C|1499
5W4K|1|1A|A|1500
5W4K|1|1A|U|1501
5W4K|1|1A|G|1502
5W4K|1|1A|G|1503
5W4K|1|1A|A|1504
5W4K|1|1A|C|1505
5W4K|1|1A|G|1506

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17