3D structure

PDB id
5W4K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGUAAGUUC
Length
9 nucleotides
Bulged bases
5W4K|1|1A|U|1977
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5W4K_048 not in the Motif Atlas
Homologous match to HL_7RQB_049
Geometric discrepancy: 0.0429
The information below is about HL_7RQB_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_51824.1
Basepair signature
cWW-F-F-tSH-F-F
Number of instances in this motif group
8

Unit IDs

5W4K|1|1A|G|1971
5W4K|1|1A|G|1972
5W4K|1|1A|U|1973
5W4K|1|1A|A|1974
5W4K|1|1A|A|1975
5W4K|1|1A|G|1976
5W4K|1|1A|U|1977
5W4K|1|1A|U|1978
5W4K|1|1A|C|1979

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1O
50S ribosomal protein L14
Chain 1a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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