HL_5W4K_058

3D structure

PDB id

5W4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

5W4K|1|1A|U|2418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5W4K_058 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0332

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5W4K|1|1A|C|2416
5W4K|1|1A|G|2417
5W4K|1|1A|U|2418
5W4K|1|1A|G|2419
5W4K|1|1A|U|2420
5W4K|1|1A|G|2421
5W4K|1|1A|G|2422
5W4K|1|1A|A|2423
5W4K|1|1A|A|2424
5W4K|1|1A|G|2425

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1P

50S ribosomal protein L15