HL_5W4K_218
3D structure
- PDB id
- 5W4K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 5W4K|1|2x|C|16, 5W4K|1|2x|G|18, 5W4K|1|2x|G|19, 5W4K|1|2x|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5W4K_218 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1487
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
5W4K|1|2x|C|13
5W4K|1|2x|A|14
5W4K|1|2x|G|15
5W4K|1|2x|C|16
5W4K|1|2x|C|17
5W4K|1|2x|U|17|||A
5W4K|1|2x|G|18
5W4K|1|2x|G|19
5W4K|1|2x|U|20
5W4K|1|2x|A|21
5W4K|1|2x|G|22
Current chains
- Chain 2x
- P-site tRNA
Nearby chains
- Chain 2A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2G
- 50S ribosomal protein L5
Coloring options: