HL_5WDT_094

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

5WDT|1|a|C|1136, 5WDT|1|a|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WDT_094 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.2002

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

5WDT|1|a|G|1134
5WDT|1|a|U|1135
5WDT|1|a|C|1136
5WDT|1|a|C|1137
5WDT|1|a|G|1138
5WDT|1|a|G|1139
5WDT|1|a|C|1140

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9