HL_5WDT_107
3D structure
- PDB id
- 5WDT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome-EF-Tu H84A complex with GppNHp
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAG(H2U)CGG(H2U)AG
- Length
- 10 nucleotides
- Bulged bases
- 5WDT|1|y|C|17, 5WDT|1|y|G|18, 5WDT|1|y|G|19
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5WDT_107 not in the Motif Atlas
- Homologous match to HL_5AXM_001
- Geometric discrepancy: 0.2092
- The information below is about HL_5AXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
5WDT|1|y|C|13
5WDT|1|y|A|14
5WDT|1|y|G|15
5WDT|1|y|H2U|16
5WDT|1|y|C|17
5WDT|1|y|G|18
5WDT|1|y|G|19
5WDT|1|y|H2U|20
5WDT|1|y|A|21
5WDT|1|y|G|22
Current chains
- Chain y
- tRNA-Phe
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 30S ribosomal protein S12
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