3D structure

PDB id
5WE4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu wt complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGCAACUCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5WE4_097 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.1498
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

5WE4|1|a|C|1314
5WE4|1|a|U|1315
5WE4|1|a|G|1316
5WE4|1|a|C|1317
5WE4|1|a|A|1318
5WE4|1|a|A|1319
5WE4|1|a|C|1320
5WE4|1|a|U|1321
5WE4|1|a|C|1322
5WE4|1|a|G|1323

Current chains

Chain a
16S rRNA

Nearby chains

Chain m
30S ribosomal protein S13
Chain n
30S ribosomal protein S14
Chain s
30S ribosomal protein S19

Coloring options:


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