HL_5WE6_079

3D structure

PDB id

5WE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGCAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WE6_079 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3299

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5WE6|1|a|G|378
5WE6|1|a|C|379
5WE6|1|a|G|380
5WE6|1|a|C|381
5WE6|1|a|A|382
5WE6|1|a|A|383
5WE6|1|a|G|384
5WE6|1|a|C|385

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16