HL_5WF0_019

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUAACUGG

Length

9 nucleotides

Bulged bases

5WF0|1|A|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5WF0_019 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.3397

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5WF0|1|A|C|640
5WF0|1|A|U|641
5WF0|1|A|U|642
5WF0|1|A|A|643
5WF0|1|A|A|644
5WF0|1|A|C|645
5WF0|1|A|U|646
5WF0|1|A|G|647
5WF0|1|A|G|648

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35